| List of the RNase H
homologues |
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| The accession numbers for the
proteins that are classified as Type 1 or Type 2 RNases H are shown. Type
2 RNases H are further classified into two families which are either
homologous to bacterial RNase HII (HII) or HIII (HIII). The accession
numbers for the proteins which do not or must not have RNase H activity
are shown in parentheses, and those for the proteins whose RNase
activities have been identified are underlined. Dozens of the viral RNase
H sequences have been determined, and seven of them are listed as
representatives. |
| origins |
Abbrev. |
|
Type 1 RNases H |
Type 2 RNases H |
| HII |
HIII |
| Retroviruses (domain of
RT) |
| |
bovine leukemia virus*
|
BLV |
GenBank S83529 |
|
|
| |
equine infectious anemia
virus* |
EIAV |
Swiss P03371 |
|
|
| |
human immunodeficiency virus
type-1* |
HIV |
Swiss U53871 |
|
|
| |
human T-cell leukemia virus
type-1* |
HTLV |
Swiss P03362 |
|
|
| |
Moloney leukemia virus*
|
MoLV |
223354 |
|
|
| |
Rous sarcoma virus* |
RSV |
GenBank AF052428 |
|
|
| |
visna lentivirus* |
VL |
476449 |
|
|
| Bacteria |
| (Gram-positive) |
| |
Bacillus
subtilis* |
Bsu |
(Swiss P54162) |
EMBL Z99112 |
EMBL Z75208 |
| |
Enterococcus
faecalis |
Efa |
(Swiss P36921) |
site1) |
|
| |
Lactococcus
lactis |
Lla |
|
GenBank AF005098** |
|
| |
Mycoplasma
capricolum |
Mca |
|
PIR S46901** |
|
| |
Mycobacterium
leprae |
Mle |
|
EMBL Z97369 |
|
| |
Mycobacterium
smegmatis |
Msm |
Swiss Q07705 |
|
|
| |
Mycobacterium
tuberculosis* |
Mtu |
(Swiss Q10512) |
Swiss Q10793 |
|
| |
Mycoplasma
genitalium* |
Mge |
|
|
Swiss P47441 |
| |
Mycoplasma
pneumoniae* |
Mpn |
|
|
Swiss P75446 |
| |
Ruminococcus
flavefaciens |
Rfl |
EMBL AJ003152** |
|
|
| |
Streptococcus
pneumoniae |
Spn |
|
site1) |
GenBank U93576 |
| |
Streptomyces
coelicolor |
Sco |
|
EMBL AL022374 |
|
| (Proteobacteria) |
| |
Buchnera
aphidicola |
Bap |
Swiss Q08885 |
|
|
| |
Brucella
melitensis |
Bme |
|
GenBank AF054610 |
|
| |
Caulobacter
crescentus |
Ccr |
|
Swiss P52975** |
|
| |
Escherichia
coli* |
Eco |
Swiss P00647 |
Swiss P10442 |
|
| |
Haemophilus
influenzae* |
Hin |
Swiss P43807 |
Swiss P43808 |
|
| |
Helicobacter
pylori* |
Hpy |
Swiss P56120 |
Swiss P56121 |
|
| |
Magnetospirillum
sp. |
Msp |
|
DDBJ D32253 |
|
| |
Rickettsia
prowazekii* |
Rpr |
3861258 |
3860766 |
|
| |
Salmonella
typhimurium |
Sty |
EMBL X57159 |
Swiss P40675** |
|
| |
Vibrio
cholerae |
Vch |
site**1) |
Swiss P52021** |
|
| |
Zymomonas
mobilis |
Zmo |
GenBank AF060218 |
|
|
| (Bacteroides-Flavobacterium
group) |
| |
Porphyromonas
gingivalis |
|
|
EMBL X95938** |
|
| (Deinococcus-Thermus) |
| |
Deinococcus
radiodurans |
Dra |
site**1) |
site1) |
|
| |
Thermus
thermophilus |
Tth |
Swiss P29253 |
|
|
| (Planctomyces, Chlamydia and
relatives) |
| |
Chlamydia
trachomatis* |
Ctr |
|
GenBank AE001277 |
GenBank AE001275 |
| (Spirochaetes) |
| |
Borrelia
burgdorferi* |
Bbu |
|
GenBank AE001118 |
|
| |
Treponema
pallidum* |
Tpa |
Genbank AE001215 |
|
|
| (Green sulfur
bacteria) |
| |
Chlorobium
tepidum |
Cte |
site**1) |
site1) |
|
| (Cyanobacteria) |
| |
Synechocystis sp.
PCC6803* |
Ssp |
DDBJ D64004 |
DDBJ D90899 |
|
| (Others) |
| |
Aquifex
aeolicus* |
Aae |
|
GenBank AE000765 |
GenBank AE000755 |
| |
Thermotoga
maritima |
Tma |
|
site1) |
|
| Archaea |
| |
Archaeoglobus
fulgidus* |
Afu |
|
GenBank AE001062 |
|
| |
Methanobacterium
thermoautotrophicum* |
Mth |
|
GenBank AE000875 |
|
| |
Methanococcus
jannaschii* |
Mja |
|
GenBank U67470 |
|
| |
Pyrococcus
furiosus |
Pfu |
|
site1) |
|
| |
Pyrococcus
horikoshii* |
Pho |
|
DDBJ AP000006 |
|
| |
Pyrococcus
kodakaraensis |
Pko |
|
DDBJ AB012613 |
|
| Eukaryotes |
| |
Saccharomyces
cerevisiae* |
Sce |
Swiss Q04740 |
EMBL Z71348 |
|
| |
Schizosaccharomyces
pombe |
Spo |
GenBank AF048992 |
Swiss Q10236 |
|
| |
Arabidopsis
thaliana |
Ath |
|
EMBL AL0313692) |
|
| |
Crithidia
fasciculata |
Cfa |
Swiss Q07762 |
|
|
| |
Trypanosoma
brucei |
Tbr |
GenBank U74470 |
|
|
| |
Caenorhabditis
elegans |
Cel |
GenBank U41994 |
EMBL Z66524 |
|
| |
Drosophila
melanogaster |
Dme |
GenBank AF032921 |
|
|
| |
Gallus gallus |
Gga |
Swiss D26340 |
|
|
| |
Mus musculus |
Mmu |
GenBank AF048993 |
W71720** |
|
| |
Homo sapiens |
Hsa |
GenBank AF048994 |
EMBL Z97029 |
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| *The complete genome
sequence has been determined. |
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| **Only the partial
sequence is available. |
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| 1)http://www.ncbi.nlm.nih.gov/BLAST/unfinishedgenome.html |
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| 2)
http://www.ncbi.nlm.nih.gov/ BLAST/ |
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