Recent Publication Lists

2010 Original Papers Foophow, T., Tanaka, S.-i., Koga, Y., Takano, K., and Kanaya, S. (2010) Subtilisin-like serine protease from hyperthermophilic archaeon Thermococcus kodakaraensis with N- and C-terminal propeptides. Protein Eng. Des. Sel. 23, 347-355.   Kanaya, E., Sakabe, T., Nguyen, N., Koikeda, S., Koga, Y., Takano, K., and Kanaya, S. (2010) Cloning of the RNase H genes from a metagenomic DNA library: identification of a new type 1 RNase H without a typical active-site motif. J. Appl. Microbiol. 109, 974-983.   Tanaka, M., Chon, H., Angkawidjaja, C., Koga, Y., Takano, K., and Kanaya, S. (2010) Protein core adaptability: crystal structures of the cavity-filling variants of Escherichia coli RNase HI. Protein Pept. Lett. 17, 1163-1169.   Kato, T., Miyanaga, A., Kanaya, S., and Morikawa, M. (2010) Gene cloning and characterization of an aldehyde dehydrogenase from long-chain alkane-degrading Geobacillus thermoleovorans B23. Extremophiles 14, 33-39.   Angkawidjaja, C., Matsumura, H., Koga, Y., Takano, K., and Kanaya, S. (2010) X-ray crystallographic and MD simulation studies on the interfacial activation mechanism of a family I.3 lipase with two lids. J. Mol. Biol. 400, 82-95.   Foophow, T., Tanaka, S.-i., Angkawidjaja, C., Koga, Y., Takano, K., and Kanaya, S. (2010) Crystal structure of a subtilisin homologue, Tk-SP, from Thermococcus kodakaraensis: requirement of a C-terminal β-jelly roll domain for hyperstability. J. Mol. Biol. 400, 865-877.   Okada, J., Okamoto, T., Mukaiyama, A., Tadokoro, T., You, D. J., Chon, H., Koga, Y., Takano, K., and Kanaya, S. (2010) Evolution and thermodynamics of slow unfolding of hyperstable monomeric proteins. BMC Evol. Biol. 10, 207.   Jongruja, N., You, D. J., Kanaya, E., Koga, Y., Takano, K., and Kanaya, S. (2010) Importance of an N-terminal hybrid binding domain for substrate binding and Mg2+-dependent activity of RNase HI from Thermotoga maritima. FEBS J. 277, 4474-4489.   Kobayashi, R., Hirano, N., Kanaya, S., Saito, I., and Haruki, M. (2010) Enhancement of the enzymatic activity of Escherichia coli acetyl esterase by random mutagenesis. J. Molec. Catal. B: Enzymatic 67, 155-161.   Murai, R., Yoshikawa, H. Y., Takahashi, Y., Maruyama, M., Sugiyama, S., Sazaki, G., Adachi, H., Takano, K., Matsumura, H., Murakami, S., Inoue, T., and Mori, Y. (2010) Enhancement of femtosecond laser-induced nucleation of protein in a gel solution. Appl. Phys. Let. 96, 043702.   Pace, C. N., Huyghues-Despointes, B. M. P., Fu, H., Takano, K., Scholtz, J. M., and Grimsley, G. R. (2010) Urea denatured state ensembles contain extensive secondary structure that is increased in hydrophobic proteins. Protein Sci. 19, 929-943.   Nagashima, K., Abe, M., Morita, S., Oyabu, N., Kobayashi, K., Yamada, H., Ohta, M., Kokawa, R., Murai, R., Matsumura, H., Adachi, H., Takano, K., Murakami, S., Inoue, T., and Mori, Y. (2010) Molecular resolution investigation of tetragonal lysozyme(110) face in liquid by FM-AFM. J. Vac. Sci. Technol. B28, C4C11-C4C14.   Kakinouchi, K., Nakamura, T., Tamada, T., Adachi, H., Sugiyama, S., Maruyama, M., Takahashi, Y., Takano, K., Murakami, S., Inoue, T., Kuroki, R., Mori, Y., and Matsumura, H. (2010) Growth of large protein crystals by a large-scale hanging drop method. J. Appl. Cryst. 43, 937-939.   Shimizu, N., Sugiyama, S., Maruyama, M., Takahashi, Y., Adachi, M., Tamada, T., Hidaka, K., Hayashi, Y., Kimura, T., Kiso, Y., Adachi, H., Takano, K., Murakami, S., Inoue, T., Kuroki, R., Mori, Y., and Matsumura, H. (2010) Crystal growth procedure of HIV-1 protease-inhibitor KNI-272 complex for neutron structural analysis at 1.9A resolution. Cryst. Growth Des. 10, 2990-2994.   Maruyama, M., Shimizu, N., Sugiyama, S., Takahashi, Y., Adachi, H., Takano, K., Murakami, S., Inoue, T., Matsumura, H., and Mori, Y. (2010) Estimated effects of silicone glue on protein crystal growth. J. Cryst. Growth 312, 2771-2774.   Nomura, Y., Sugiyama, S., Sakamoto, T., Miyakawa, S., Adachi, H., Takano, K., Murakami, S., Inoue, T., Mori, Y., Nakamura, Y., Matsumura, H. (2010) Conformational plasticity of RNA for target recognition as revealed by the 2.15 A crystal structure of a human IgG-aptamer complex. Nucleic Acids Res. 38, 7822-7829.   Books Reviews 井上豪、安達宏昭、森勇介、高野和文、松村浩由、村上聡、福西快文、中村春木、木下誉富、仲西功、奥野恭史、南方聖司、佐久間俊広、高田俊和、北島正人、福岡良忠、坂田恒昭（2010）創薬バリューチェインのインシリコ技術を活用した阻害剤開発の試み、日本結晶学会誌、52, 89-94.   Others 金谷茂則（2010）海外の大学でのファカルティ・ディベロップメント、生産と技術、62, 74-76.   Hirata, A., Tsuji, T., Imura, H., Yamada, T., Ueno, T., Mishima, K., Natsume, N., Sugahara, T., Koga, Y., Takano, K., and Nakamura, H.（2010）Localization of the HOXC homeobox gene family during palate formation in mice. XX Congress of the European Association of Cranio-Maxillo-Facial Surgery, 415-420.